sarpy package¶

Subpackages¶

Submodules¶

sarpy.ROI module¶

sarpy.generate_summary module¶

Created on Mon Jul 22 21:10:05 2013

@author: stefan

sarpy.generate_summary.generate_summary(masterlist_name)[source]¶

sarpy.helpers module¶

Created on Mon Jul 22 21:10:05 2013

@author: stefan

sarpy.helpers.adata2df(scn_name, adatadict, infodict, roi_adata=None)[source]¶: s=’OEP8Cs12.Q21/7’ Usage example: sarpy.helpers.adata2df(scn_name=s,adatadict={‘dOE1’:’OEdraft2’,

‘dOE2’:’OEdraft2’, ‘dOE3’:’OEdraft2’}, infodict={‘AnimalID’:s.split(‘.’)[0],

‘Treatment’:’Ctrl’, ‘Loaction’:’sc’})

sarpy.helpers.find_o2_inj_point(data)[source]¶

sarpy.helpers.flatten_list(l)[source]¶

sarpy.helpers.git_repo_state()[source]¶

sarpy.helpers.natural_sort(l)[source]¶

Sort a list by a natural sort order (number ascending) and even if bracketed by blocks of alpha-characters.

This is based on code a blog post by Jeff Atwood. It is also discussed on stackoverflow.

sarpy.helpers.replace_nan_with(arr, value=0)[source]¶: replace the NaN values (isnan) with value (default=0) for better ImageJ compatibility

sarpy.helpers.shellquote(s)[source]¶

sarpy.helpers.smooth_SG(y, window_size, order, deriv=0, rate=1)[source]¶

sarpy.visualization module¶

sarpy.viz module¶

Module contents¶